Products & Solutions
GS De Novo Assembler Software
Improved power for processing larger, more complex genomes and transcriptomes- A straightforward tool for de novo assembly of genomes up to 3GB in size.
- Perform whole-genome assembly with shotgun reads or add paired end data to order contigs into scaffolds.
- Assemblies can be generated in as little as 15 minutes for microbial genomes and in less than 24 hours for larger genomes.
- Now supports the particular needs and conditions of transcriptome analysis for de novo assembly of transcripts and splice variant detection.
- Co-assemble GS FLX Titanium reads with GS FLX Standard shotgun, paired end and Sanger sequencing reads.
- Data outputs: fna.file (sequence of contigs, FASTA format), qual.file (corresponding Phred equivalent quality score), ace.file (alignment of the reads to contig sequence)
Figure 1: GS De Novo Assembler. Example of the GS De Novo Assembler Alignment Results window showing the multiple alignment of reads from a sequencing run assembled into a contig, with a few highlighted base differences