Products & Solutions
GS De Novo Assembler Software
- Performs whole genome shotgun assembly of genomes with or without paired-end data.
- Order contigs into scaffolds using supported paired-end reads.
- Assemble larger, more complex genomes up to 400 megabases in size with a 64-bit assembler or up to 20 megabases with a 32-bit assembler.
- Co-assemble with Sanger Sequencing reads.
- Select the read files you want to assemble by browsing in the GUI.
- Data outputs: fna.file (sequence of contigs, FASTA format), qual.file (corresponding Phred equivalent quality score), ace.file (alignment of the reads to contig sequence)
Figure 1: GS De Novo Assembler. Example of the GS De Novo Assembler Alignment Results window showing the multiple alignment of reads from a sequencing run assembled into a contig, with a few highlighted base differences