Products & Solutions
GS Reference Mapper Software
- Map reads to any reference genome and generate a consensus sequence.
- Easily view all differences compared to the reference sequence with automatic output to separate files: Insertions (blocks up to 50 bases), Deletions (blocks up to 50 bases), SNPs
- Quickly identify high confidence difference compared to the reference genome, which are singled out in a separate file.
- Compare large, complex genomes of any size including: resequencing of whole genomes from humans, plants, yeasts, bacteria, fungi, viruses, YACs, BACs, fosmids
- Data outputs: fna.file (sequence of contigs, FASTA format), qual.file (corresponding Phred equivalent quality score), ace.file (consensus alignment of the reads against a given reference sequence)
Figure 1: GS Reference Mapper. Example of the GS Reference Mapper Flowgram window showing a high confidence difference between the reads of the sequencing run and the reference sequence. The difference is the deletion of a single "G".