454 Life Sciences

Characterization of nucleotide misincorporation patterns in the iceman's mitochondrial DNA.  Olivieri C, Ermini L, Rizzi E, Corti G, Bonnal R, Luciani S, Marota I, De Bellis G, Rollo F. (1/8/2010) PLoS One 5(1): e8629.
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Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians.  Helena Malmström, M.Thomas P. Gilbert, Mark G. Thomas, Mikael Brandström, Jan Storå, Petra Molnar, Pernille K. Andersen, Christian Bendixen, Gunilla Holmlund, Anders Götherström , and Eske Willerslev (9/24/2009) Current Biology 19(20): 1758-62.
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Tracking the past: interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius.  Zhao F, Qi J, Schuster SC. (8/19/2009) Genome Research 19(8): 1384-92.
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Targeted retrieval and analysis of five Neandertal mtDNA genomes.  Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Schmitz R, Doronichev VB, Golovanova LV, de la Rasilla M, Fortea J, Rosas A, Pääbo S. (7/17/2009) Science 325(5938): 318-21.
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Paleogenomics in a temperate environment: shotgun sequencing from an extinct mediterranean caprine.  Ramírez O, Gigli E, Bover P, Alcover JA, Bertranpetit J, Castresana J, Lalueza-Fox C. (5/22/2009) PLoS ONE 4(5): e5670
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Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data.  Allentoft M, Schuster S, Holdaway R, Hale M, McLay E, Oskam C, Gilbert MT, Spencer P, Willerslev E, Bunce M. (3/1/2009) Biotechniques 46(3): 195-200
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The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).  Miller W, Drautz D, Janecka J, Lesk A, Ratan A, Tomsho L, Packard M, Zhang Y, McClellan L, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson P, Huson D, Helgen K, Murphy W, Götherström A and Schuster S (2/1/2009) Genome Research 19(2): 213-20
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Sequencing the nuclear genome of the extinct woolly mammoth.  Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, Tomsho LP, Packard MD, Zhao F, Sher A, Tikhonov A, Raney B, Patterson N, Lindblad-Toh K, Lander ES, Knight JR, Irzyk GP, Fredrikson KM, Harkins TT, Sheridan S, Pringle T, Schuster SC. (11/20/2008) Nature 456: 387-390
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Complete Mitochondrial Genome Sequence of the Tyrolean Iceman.  Luca Ermini, Cristina Olivieri, Ermanno Rizzi, Giorgio Corti, Raoul Bonnal, Pedro Soares, Stefania Luciani, Isolina Marota, Gianluca De Bellis, Martin B. Richards and Franco Rollo (11/11/2008) Current Biology 18: 1-7
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A complete neandertal mitochondrial genome sequence determined by high-throughput sequencing.  Green, Malaspinas, Krause, Briggs, Johnson, Uhler, Meyer, Good , Maricic, Stenzel, Prüfer, Siebauer, Burbano, Ronan, Rothberg, Egholm, Rudan, Brajkoviæ, Kuæan, Gusiæ, Wikström, Laakkonen, Kelso, Slatkin, Pääbo. (8/8/2008) Cell 134: 416-426
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Identification of ancient remains through genomic sequencing  Blow MJ, Zhang T, Woyke T, Speller CF, Krivoshapkin A, Yang DY, Derevianko A, Rubin EM. (7/11/2008) Genome Research :
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Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland  Gilbert MT, Kivisild T, Grønnow B, Andersen PK, Metspalu E, Reidla M, Tamm E, Axelsson E, Götherström A, Campos PF, Rasmussen M, Metspalu M, Higham TF, Schwenninger JL, Nathan R, De Hoog CJ, Koch A, Møller LN, Andreasen C, Meldgaard M, Villems R, Bendixen C, Willerslev E (6/27/2008) Science 320: 1787-1789
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Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes  Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, Shidlovskiy F, Tikhonov A, Willerslev E, Iacumin P, Buigues B, Ericson PG, Germonpré M, Kosintsev P, Nikolaev V, Nowak-Kemp M, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC (6/17/2008) PNAS 105: 8327-8332
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Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts  M. Thomas P. Gilbert, Lynn P. Tomsho, Snjezana Rendulic, Michael Packard, Daniela I. Drautz, Andrei Sher, Alexei Tikhonov, Love Dalén, Tatyana Kuznetsova, Pavel Kosintsev, Paula F. Campos, Thomas Higham, Matthew J. Collins, Andrew S. Wilson, Fyodor Shidlovskiy, Bernard Buigues, Per G. P. Ericson, Mietje Germonpré, Anders Götherström, Paola Iacumin, Vladimir Nikolaev, Malgosia Nowak-Kemp, Eske Willerslev, James R. Knight, Gerard P. Irzyk, Clotilde S. Perbost, Karin M. Fredrikson, Timothy T. Harkins, Sharon Sheridan, Webb Miller, Stephan C. Schuster (9/28/2007) Science 317: 1927-1930
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Patterns of damage in genomic DNA sequences from a Neandertal  Briggs AW, Stenzel U, Johnson PL, Green RE, Kelso J, Prüfer K, Meyer M, Krause J, Ronan MT, Lachmann M, Pääbo S (8/21/2007) PNAS 104: 14616-14621
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Sequencing and Analysis of Neanderthal Genomic DNA  James P. Noonan, Graham Coop, Sridhar Kudaravalli, Doug Smith, Johannes Krause, Joe Alessi, Feng Chen, Darren Platt, Svante Pääbo, Jonathan K. Pritchard, and Edward M. Rubin (11/17/2006) Science 314: 1113-1118
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Analysis of one million base pairs of Neanderthal DNA  Richard E. Green, Johannes Krause, Susan E. Ptak, Adrian W. Briggs, Michael T. Ronan, Jan F. Simons, Lei Du, Michael Egholm, Jonathan M. Rothberg, Maja Paunovic and Svante Paabo (11/16/2006) Nature 71: 330-336
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Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA  M. Stiller, R. E. Green, M. Ronan, J. F. Simons, L. Du, W. He, M. Egholm, J. M. Rothberg, S. G. Keats, N. D. Ovodov, E. E. Antipina, G. F. Baryshnikov, Y. V. Kuzmin, A. A. Vasilevski, G. E. Wuenschell, J. Termini, M. Hofreiter, V. Jaenicke-Despres, and S. Paabo (9/12/2006) PNAS 103: 13578–13584
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Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis  M. Thomas P. Gilbert, Jonas Binladen, Webb Miller, Carsten Wiuf, Eske Willerslev, Hendrik Poinar, John E. Carlson, James H. Leebens-Mack and Stephan C. Schuster (8/18/2006) Nucleic Acids Research :
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Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA  Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC (12/20/2005) Science 311: 392-394
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